Reference¶

This is the class and reference of iced.

`iced.normalization`: Normalization¶

Functions¶

`normalization.ICE_normalization`(X[, SS, …])	ICE normalization
`normalization.SCN_normalization`(X[, …])	Sequential Component Normalization
`normalization.estimate_block_biases`(counts, …)	Estimates block biases

`iced.filter`: Filter¶

Functions¶

`filter.filter_low_counts`(X[, lengths, …])	Filter rows and columns with low counts
`filter.filter_high_counts`(X[, lengths, …])	Filter rows and columns with high counts

`iced.datasets`: Datasets¶

Functions¶

datasets.load_sample_yeast()

Load and return a sample of S.

`iced.utils`: Utils¶

Functions¶

`utils.get_intra_mask`(lengths[, counts])	Returns a mask for intrachromosomal interactions
`utils.get_inter_mask`(lengths)	Returns a mask for interchromosomal interactions
`utils.extract_sub_contact_map`(counts, …)	Extract the contact map associated to a given list of chromosome
`utils.downsample_resolution`(counts, lengths)	Downsamples the resolution of a matrix