Reference

This is the class and function reference of the project.

pastis.config: Configuration

Functions

get_default_options()

Returns default options

pastis.datasets: Datasets

Functions

generate_dataset_from_distances(dis[, …])

Generate dataset from distance matrix

pastis.optimization: Optimization

Functions

mds.estimate_X(counts[, alpha, beta, ini, …])

Estimating the structure from contact count data using MDS/NMDS

poisson_structure.estimate_X(counts[, …])

Estimate the parameters of g